Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 5580 | 16963;16964;16965 | chr2:178732231;178732230;178732229 | chr2:179596958;179596957;179596956 |
N2AB | 5263 | 16012;16013;16014 | chr2:178732231;178732230;178732229 | chr2:179596958;179596957;179596956 |
N2A | 4336 | 13231;13232;13233 | chr2:178732231;178732230;178732229 | chr2:179596958;179596957;179596956 |
N2B | None | None | chr2:None | chr2:None |
Novex-1 | None | None | chr2:None | chr2:None |
Novex-2 | None | None | chr2:None | chr2:None |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
N/D | rs376598696 | None | 0.02 | N | 0.235 | 0.087 | None | gnomAD-2.1.1 | 2.14E-05 | None | None | None | None | N | None | 2.48036E-04 | 0 | None | 0 | 0 | None | 0 | None | 0 | 0 | 0 |
N/D | rs376598696 | None | 0.02 | N | 0.235 | 0.087 | None | gnomAD-3.1.2 | 1.97E-05 | None | None | None | None | N | None | 7.24E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
N/D | rs376598696 | None | 0.02 | N | 0.235 | 0.087 | None | gnomAD-4.0.0 | 8.96753E-06 | None | None | None | None | N | None | 1.18399E-04 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
N/A | 0.1894 | likely_benign | 0.2079 | benign | -0.612 | Destabilizing | 0.953 | D | 0.533 | neutral | None | None | None | None | N |
N/C | 0.2772 | likely_benign | 0.3276 | benign | 0.304 | Stabilizing | 0.999 | D | 0.669 | neutral | None | None | None | None | N |
N/D | 0.0945 | likely_benign | 0.1021 | benign | 0.026 | Stabilizing | 0.02 | N | 0.235 | neutral | N | 0.455341682 | None | None | N |
N/E | 0.2889 | likely_benign | 0.3048 | benign | 0.023 | Stabilizing | 0.91 | D | 0.432 | neutral | None | None | None | None | N |
N/F | 0.4975 | ambiguous | 0.5497 | ambiguous | -0.785 | Destabilizing | 0.999 | D | 0.678 | prob.neutral | None | None | None | None | N |
N/G | 0.1546 | likely_benign | 0.1626 | benign | -0.841 | Destabilizing | 0.953 | D | 0.419 | neutral | None | None | None | None | N |
N/H | 0.0961 | likely_benign | 0.1049 | benign | -0.83 | Destabilizing | 0.997 | D | 0.518 | neutral | N | 0.51791228 | None | None | N |
N/I | 0.3622 | ambiguous | 0.4144 | ambiguous | -0.081 | Destabilizing | 0.991 | D | 0.707 | prob.neutral | N | 0.511671309 | None | None | N |
N/K | 0.1886 | likely_benign | 0.198 | benign | -0.084 | Destabilizing | 0.939 | D | 0.449 | neutral | N | 0.477144639 | None | None | N |
N/L | 0.2733 | likely_benign | 0.3012 | benign | -0.081 | Destabilizing | 0.993 | D | 0.695 | prob.neutral | None | None | None | None | N |
N/M | 0.3549 | ambiguous | 0.3886 | ambiguous | 0.378 | Stabilizing | 0.999 | D | 0.613 | neutral | None | None | None | None | N |
N/P | 0.7888 | likely_pathogenic | 0.8241 | pathogenic | -0.231 | Destabilizing | 0.993 | D | 0.621 | neutral | None | None | None | None | N |
N/Q | 0.2318 | likely_benign | 0.2498 | benign | -0.515 | Destabilizing | 0.993 | D | 0.505 | neutral | None | None | None | None | N |
N/R | 0.2029 | likely_benign | 0.2169 | benign | -0.063 | Destabilizing | 0.993 | D | 0.51 | neutral | None | None | None | None | N |
N/S | 0.0772 | likely_benign | 0.0817 | benign | -0.36 | Destabilizing | 0.939 | D | 0.431 | neutral | N | 0.475916872 | None | None | N |
N/T | 0.1974 | likely_benign | 0.2207 | benign | -0.201 | Destabilizing | 0.969 | D | 0.445 | neutral | N | 0.51116433 | None | None | N |
N/V | 0.3327 | likely_benign | 0.3793 | ambiguous | -0.231 | Destabilizing | 0.993 | D | 0.699 | prob.neutral | None | None | None | None | N |
N/W | 0.6659 | likely_pathogenic | 0.7088 | pathogenic | -0.673 | Destabilizing | 0.999 | D | 0.662 | neutral | None | None | None | None | N |
N/Y | 0.1651 | likely_benign | 0.1839 | benign | -0.461 | Destabilizing | 0.997 | D | 0.615 | neutral | N | 0.503277518 | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.