Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 5674 | 17245;17246;17247 | chr2:178731855;178731854;178731853 | chr2:179596582;179596581;179596580 |
N2AB | 5357 | 16294;16295;16296 | chr2:178731855;178731854;178731853 | chr2:179596582;179596581;179596580 |
N2A | 4430 | 13513;13514;13515 | chr2:178731855;178731854;178731853 | chr2:179596582;179596581;179596580 |
N2B | None | None | chr2:None | chr2:None |
Novex-1 | None | None | chr2:None | chr2:None |
Novex-2 | None | None | chr2:None | chr2:None |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
N/K | rs1373550135 | 0.47 | 0.27 | N | 0.303 | 0.113 | 0.0716867268079 | gnomAD-2.1.1 | 8.04E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 6.54E-05 | None | 0 | 0 | 0 |
N/K | rs1373550135 | 0.47 | 0.27 | N | 0.303 | 0.113 | 0.0716867268079 | gnomAD-4.0.0 | 4.77403E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 4.29824E-05 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
N/A | 0.2084 | likely_benign | 0.1914 | benign | -0.308 | Destabilizing | 0.013 | N | 0.191 | neutral | None | None | None | None | I |
N/C | 0.3368 | likely_benign | 0.3169 | benign | 0.28 | Stabilizing | 0.995 | D | 0.376 | neutral | None | None | None | None | I |
N/D | 0.0976 | likely_benign | 0.0936 | benign | 0.295 | Stabilizing | 0.006 | N | 0.142 | neutral | N | 0.420247674 | None | None | I |
N/E | 0.2954 | likely_benign | 0.2766 | benign | 0.264 | Stabilizing | 0.329 | N | 0.331 | neutral | None | None | None | None | I |
N/F | 0.5894 | likely_pathogenic | 0.5675 | pathogenic | -0.73 | Destabilizing | 0.981 | D | 0.4 | neutral | None | None | None | None | I |
N/G | 0.188 | likely_benign | 0.1775 | benign | -0.469 | Destabilizing | 0.329 | N | 0.315 | neutral | None | None | None | None | I |
N/H | 0.107 | likely_benign | 0.1051 | benign | -0.434 | Destabilizing | 0.927 | D | 0.341 | neutral | N | 0.47645046 | None | None | I |
N/I | 0.3396 | likely_benign | 0.3378 | benign | 0.024 | Stabilizing | 0.927 | D | 0.452 | neutral | N | 0.495652296 | None | None | I |
N/K | 0.1987 | likely_benign | 0.1849 | benign | 0.175 | Stabilizing | 0.27 | N | 0.303 | neutral | N | 0.390215555 | None | None | I |
N/L | 0.3353 | likely_benign | 0.3212 | benign | 0.024 | Stabilizing | 0.704 | D | 0.437 | neutral | None | None | None | None | I |
N/M | 0.3841 | ambiguous | 0.3743 | ambiguous | 0.221 | Stabilizing | 0.981 | D | 0.371 | neutral | None | None | None | None | I |
N/P | 0.7327 | likely_pathogenic | 0.6941 | pathogenic | -0.06 | Destabilizing | 0.828 | D | 0.45 | neutral | None | None | None | None | I |
N/Q | 0.2471 | likely_benign | 0.2347 | benign | -0.236 | Destabilizing | 0.085 | N | 0.159 | neutral | None | None | None | None | I |
N/R | 0.2371 | likely_benign | 0.2177 | benign | 0.225 | Stabilizing | 0.704 | D | 0.363 | neutral | None | None | None | None | I |
N/S | 0.0848 | likely_benign | 0.0817 | benign | -0.075 | Destabilizing | 0.01 | N | 0.125 | neutral | N | 0.418863594 | None | None | I |
N/T | 0.1543 | likely_benign | 0.1471 | benign | 0.041 | Stabilizing | 0.27 | N | 0.301 | neutral | N | 0.464982673 | None | None | I |
N/V | 0.3371 | likely_benign | 0.332 | benign | -0.06 | Destabilizing | 0.704 | D | 0.453 | neutral | None | None | None | None | I |
N/W | 0.7986 | likely_pathogenic | 0.7809 | pathogenic | -0.742 | Destabilizing | 0.995 | D | 0.434 | neutral | None | None | None | None | I |
N/Y | 0.2265 | likely_benign | 0.2164 | benign | -0.454 | Destabilizing | 0.975 | D | 0.396 | neutral | N | 0.495478938 | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.