Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 5789 | 17590;17591;17592 | chr2:178731401;178731400;178731399 | chr2:179596128;179596127;179596126 |
N2AB | 5472 | 16639;16640;16641 | chr2:178731401;178731400;178731399 | chr2:179596128;179596127;179596126 |
N2A | 4545 | 13858;13859;13860 | chr2:178731401;178731400;178731399 | chr2:179596128;179596127;179596126 |
N2B | None | None | chr2:None | chr2:None |
Novex-1 | None | None | chr2:None | chr2:None |
Novex-2 | None | None | chr2:None | chr2:None |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/F | None | None | 0.175 | N | 0.665 | 0.264 | 0.530948259028 | gnomAD-4.0.0 | 3.18241E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 5.71631E-06 | 0 | 0 |
L/V | rs778228033 | -1.413 | None | N | 0.317 | 0.134 | 0.468586609112 | gnomAD-2.1.1 | 4.02E-06 | None | None | None | None | N | None | 0 | 2.9E-05 | None | 0 | 0 | None | 0 | None | 0 | 0 | 0 |
L/V | rs778228033 | -1.413 | None | N | 0.317 | 0.134 | 0.468586609112 | gnomAD-4.0.0 | 1.59121E-06 | None | None | None | None | N | None | 0 | 2.28666E-05 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/A | 0.7207 | likely_pathogenic | 0.7345 | pathogenic | -2.946 | Highly Destabilizing | 0.055 | N | 0.536 | neutral | None | None | None | None | N |
L/C | 0.675 | likely_pathogenic | 0.6655 | pathogenic | -2.474 | Highly Destabilizing | 0.958 | D | 0.751 | deleterious | None | None | None | None | N |
L/D | 0.9867 | likely_pathogenic | 0.9868 | pathogenic | -3.491 | Highly Destabilizing | 0.667 | D | 0.79 | deleterious | None | None | None | None | N |
L/E | 0.9398 | likely_pathogenic | 0.9417 | pathogenic | -3.227 | Highly Destabilizing | 0.22 | N | 0.72 | prob.delet. | None | None | None | None | N |
L/F | 0.1541 | likely_benign | 0.1578 | benign | -1.838 | Destabilizing | 0.175 | N | 0.665 | neutral | N | 0.464431752 | None | None | N |
L/G | 0.9336 | likely_pathogenic | 0.9375 | pathogenic | -3.547 | Highly Destabilizing | 0.364 | N | 0.734 | prob.delet. | None | None | None | None | N |
L/H | 0.756 | likely_pathogenic | 0.7601 | pathogenic | -3.073 | Highly Destabilizing | 0.002 | N | 0.588 | neutral | D | 0.534697127 | None | None | N |
L/I | 0.0653 | likely_benign | 0.0639 | benign | -1.179 | Destabilizing | None | N | 0.279 | neutral | N | 0.329308743 | None | None | N |
L/K | 0.9037 | likely_pathogenic | 0.9051 | pathogenic | -2.519 | Highly Destabilizing | 0.004 | N | 0.533 | neutral | None | None | None | None | N |
L/M | 0.1545 | likely_benign | 0.1541 | benign | -1.198 | Destabilizing | 0.497 | N | 0.635 | neutral | None | None | None | None | N |
L/N | 0.9166 | likely_pathogenic | 0.9179 | pathogenic | -2.99 | Highly Destabilizing | 0.497 | N | 0.79 | deleterious | None | None | None | None | N |
L/P | 0.9665 | likely_pathogenic | 0.9652 | pathogenic | -1.751 | Destabilizing | 0.822 | D | 0.795 | deleterious | D | 0.534697127 | None | None | N |
L/Q | 0.7773 | likely_pathogenic | 0.7924 | pathogenic | -2.782 | Highly Destabilizing | 0.497 | N | 0.781 | deleterious | None | None | None | None | N |
L/R | 0.8159 | likely_pathogenic | 0.8224 | pathogenic | -2.25 | Highly Destabilizing | 0.096 | N | 0.763 | deleterious | D | 0.534697127 | None | None | N |
L/S | 0.8614 | likely_pathogenic | 0.8741 | pathogenic | -3.697 | Highly Destabilizing | 0.22 | N | 0.697 | prob.neutral | None | None | None | None | N |
L/T | 0.7364 | likely_pathogenic | 0.7541 | pathogenic | -3.27 | Highly Destabilizing | 0.22 | N | 0.606 | neutral | None | None | None | None | N |
L/V | 0.0896 | likely_benign | 0.0902 | benign | -1.751 | Destabilizing | None | N | 0.317 | neutral | N | 0.453731969 | None | None | N |
L/W | 0.5999 | likely_pathogenic | 0.6113 | pathogenic | -2.276 | Highly Destabilizing | 0.958 | D | 0.807 | deleterious | None | None | None | None | N |
L/Y | 0.6534 | likely_pathogenic | 0.6472 | pathogenic | -2.022 | Highly Destabilizing | 0.497 | N | 0.721 | prob.delet. | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.