Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 5801 | 17626;17627;17628 | chr2:178731365;178731364;178731363 | chr2:179596092;179596091;179596090 |
N2AB | 5484 | 16675;16676;16677 | chr2:178731365;178731364;178731363 | chr2:179596092;179596091;179596090 |
N2A | 4557 | 13894;13895;13896 | chr2:178731365;178731364;178731363 | chr2:179596092;179596091;179596090 |
N2B | None | None | chr2:None | chr2:None |
Novex-1 | None | None | chr2:None | chr2:None |
Novex-2 | None | None | chr2:None | chr2:None |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
V/I | rs556053351 | -0.431 | None | N | 0.261 | 0.069 | 0.224531998449 | gnomAD-3.1.2 | 6.57E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
V/I | rs556053351 | -0.431 | None | N | 0.261 | 0.069 | 0.224531998449 | 1000 genomes | 1.99681E-04 | None | None | None | None | N | None | 0 | 0 | None | None | 0 | 1E-03 | None | None | None | 0 | None |
V/I | rs556053351 | -0.431 | None | N | 0.261 | 0.069 | 0.224531998449 | gnomAD-4.0.0 | 6.56797E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.4702E-05 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
V/A | 0.1858 | likely_benign | 0.1766 | benign | -1.902 | Destabilizing | 0.012 | N | 0.389 | neutral | N | 0.463481163 | None | None | N |
V/C | 0.5568 | ambiguous | 0.5174 | ambiguous | -1.348 | Destabilizing | 0.864 | D | 0.595 | neutral | None | None | None | None | N |
V/D | 0.3747 | ambiguous | 0.3316 | benign | -2.562 | Highly Destabilizing | 0.171 | N | 0.621 | neutral | N | 0.483029716 | None | None | N |
V/E | 0.3369 | likely_benign | 0.3075 | benign | -2.313 | Highly Destabilizing | 0.072 | N | 0.574 | neutral | None | None | None | None | N |
V/F | 0.0778 | likely_benign | 0.0708 | benign | -1.053 | Destabilizing | None | N | 0.391 | neutral | N | 0.452880167 | None | None | N |
V/G | 0.2822 | likely_benign | 0.2756 | benign | -2.454 | Highly Destabilizing | 0.055 | N | 0.575 | neutral | N | 0.464174596 | None | None | N |
V/H | 0.3977 | ambiguous | 0.3607 | ambiguous | -2.337 | Highly Destabilizing | 0.864 | D | 0.642 | neutral | None | None | None | None | N |
V/I | 0.0641 | likely_benign | 0.0609 | benign | -0.344 | Destabilizing | None | N | 0.261 | neutral | N | 0.407203806 | None | None | N |
V/K | 0.5303 | ambiguous | 0.4659 | ambiguous | -1.374 | Destabilizing | 0.072 | N | 0.567 | neutral | None | None | None | None | N |
V/L | 0.1738 | likely_benign | 0.1566 | benign | -0.344 | Destabilizing | None | N | 0.213 | neutral | N | 0.452186734 | None | None | N |
V/M | 0.1315 | likely_benign | 0.1207 | benign | -0.495 | Destabilizing | 0.214 | N | 0.546 | neutral | None | None | None | None | N |
V/N | 0.2275 | likely_benign | 0.1955 | benign | -1.791 | Destabilizing | 0.214 | N | 0.626 | neutral | None | None | None | None | N |
V/P | 0.9745 | likely_pathogenic | 0.9666 | pathogenic | -0.838 | Destabilizing | 0.356 | N | 0.589 | neutral | None | None | None | None | N |
V/Q | 0.3057 | likely_benign | 0.286 | benign | -1.562 | Destabilizing | 0.356 | N | 0.567 | neutral | None | None | None | None | N |
V/R | 0.4085 | ambiguous | 0.3454 | ambiguous | -1.382 | Destabilizing | 0.356 | N | 0.609 | neutral | None | None | None | None | N |
V/S | 0.1487 | likely_benign | 0.1354 | benign | -2.375 | Highly Destabilizing | 0.003 | N | 0.579 | neutral | None | None | None | None | N |
V/T | 0.1329 | likely_benign | 0.119 | benign | -1.982 | Destabilizing | None | N | 0.284 | neutral | None | None | None | None | N |
V/W | 0.6128 | likely_pathogenic | 0.5668 | pathogenic | -1.635 | Destabilizing | 0.676 | D | 0.665 | neutral | None | None | None | None | N |
V/Y | 0.2925 | likely_benign | 0.2669 | benign | -1.225 | Destabilizing | 0.12 | N | 0.599 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.