Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 5896 | 17911;17912;17913 | chr2:178730979;178730978;178730977 | chr2:179595706;179595705;179595704 |
N2AB | 5579 | 16960;16961;16962 | chr2:178730979;178730978;178730977 | chr2:179595706;179595705;179595704 |
N2A | 4652 | 14179;14180;14181 | chr2:178730979;178730978;178730977 | chr2:179595706;179595705;179595704 |
N2B | None | None | chr2:None | chr2:None |
Novex-1 | None | None | chr2:None | chr2:None |
Novex-2 | None | None | chr2:None | chr2:None |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
E/K | rs561557554 | -0.763 | 0.742 | N | 0.589 | 0.228 | None | gnomAD-2.1.1 | 2.07454E-04 | None | None | None | None | N | None | 1.2408E-04 | 2.83E-05 | None | 0 | 0 | None | 1.73805E-03 | None | 0 | 7.83E-06 | 0 |
E/K | rs561557554 | -0.763 | 0.742 | N | 0.589 | 0.228 | None | gnomAD-3.1.2 | 1.5133E-04 | None | None | None | None | N | None | 2.89981E-04 | 0 | 0 | 0 | 0 | None | 0 | 3.16456E-03 | 1.47E-05 | 1.86722E-03 | 0 |
E/K | rs561557554 | -0.763 | 0.742 | N | 0.589 | 0.228 | None | 1000 genomes | 3.99361E-04 | None | None | None | None | N | None | 0 | 0 | None | None | 0 | 0 | None | None | None | 2E-03 | None |
E/K | rs561557554 | -0.763 | 0.742 | N | 0.589 | 0.228 | None | gnomAD-4.0.0 | 9.79732E-05 | None | None | None | None | N | None | 2.66951E-04 | 3.33511E-05 | None | 6.7659E-05 | 0 | None | 0 | 1.65344E-04 | 3.39242E-06 | 1.34089E-03 | 1.12093E-04 |
E/Q | rs561557554 | None | 0.722 | N | 0.563 | 0.18 | 0.21279746466 | gnomAD-3.1.2 | 6.58E-06 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 1.47E-05 | 0 | 0 |
E/Q | rs561557554 | None | 0.722 | N | 0.563 | 0.18 | 0.21279746466 | gnomAD-4.0.0 | 2.48052E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 3.3924E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
E/A | 0.2531 | likely_benign | 0.2897 | benign | -0.897 | Destabilizing | 0.338 | N | 0.643 | neutral | D | 0.527170935 | None | None | N |
E/C | 0.8755 | likely_pathogenic | 0.89 | pathogenic | -0.391 | Destabilizing | 0.991 | D | 0.779 | deleterious | None | None | None | None | N |
E/D | 0.3314 | likely_benign | 0.3217 | benign | -1.299 | Destabilizing | 0.003 | N | 0.419 | neutral | N | 0.513953708 | None | None | N |
E/F | 0.8136 | likely_pathogenic | 0.8203 | pathogenic | -0.23 | Destabilizing | 0.967 | D | 0.785 | deleterious | None | None | None | None | N |
E/G | 0.4627 | ambiguous | 0.5546 | ambiguous | -1.355 | Destabilizing | 0.505 | D | 0.703 | prob.neutral | N | 0.496279074 | None | None | N |
E/H | 0.5275 | ambiguous | 0.5399 | ambiguous | -0.453 | Destabilizing | 0.967 | D | 0.581 | neutral | None | None | None | None | N |
E/I | 0.3445 | ambiguous | 0.3396 | benign | 0.394 | Stabilizing | 0.906 | D | 0.785 | deleterious | None | None | None | None | N |
E/K | 0.2369 | likely_benign | 0.3004 | benign | -0.75 | Destabilizing | 0.742 | D | 0.589 | neutral | N | 0.480281065 | None | None | N |
E/L | 0.4541 | ambiguous | 0.471 | ambiguous | 0.394 | Stabilizing | 0.906 | D | 0.752 | deleterious | None | None | None | None | N |
E/M | 0.4765 | ambiguous | 0.4769 | ambiguous | 1.014 | Stabilizing | 0.991 | D | 0.748 | deleterious | None | None | None | None | N |
E/N | 0.5104 | ambiguous | 0.5217 | ambiguous | -1.249 | Destabilizing | 0.404 | N | 0.549 | neutral | None | None | None | None | N |
E/P | 0.9923 | likely_pathogenic | 0.9951 | pathogenic | -0.017 | Destabilizing | 0.906 | D | 0.709 | prob.delet. | None | None | None | None | N |
E/Q | 0.1548 | likely_benign | 0.1735 | benign | -0.99 | Destabilizing | 0.722 | D | 0.563 | neutral | N | 0.473355093 | None | None | N |
E/R | 0.3599 | ambiguous | 0.4299 | ambiguous | -0.594 | Destabilizing | 0.01 | N | 0.379 | neutral | None | None | None | None | N |
E/S | 0.3421 | ambiguous | 0.3695 | ambiguous | -1.806 | Destabilizing | 0.05 | N | 0.416 | neutral | None | None | None | None | N |
E/T | 0.3048 | likely_benign | 0.3265 | benign | -1.388 | Destabilizing | 0.404 | N | 0.637 | neutral | None | None | None | None | N |
E/V | 0.2024 | likely_benign | 0.2032 | benign | -0.017 | Destabilizing | 0.879 | D | 0.737 | prob.delet. | N | 0.464986326 | None | None | N |
E/W | 0.9251 | likely_pathogenic | 0.9284 | pathogenic | -0.075 | Destabilizing | 0.991 | D | 0.73 | prob.delet. | None | None | None | None | N |
E/Y | 0.7356 | likely_pathogenic | 0.7523 | pathogenic | 0.059 | Stabilizing | 0.967 | D | 0.773 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.