Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 6162 | 18709;18710;18711 | chr2:178729769;178729768;178729767 | chr2:179594496;179594495;179594494 |
N2AB | 5845 | 17758;17759;17760 | chr2:178729769;178729768;178729767 | chr2:179594496;179594495;179594494 |
N2A | 4918 | 14977;14978;14979 | chr2:178729769;178729768;178729767 | chr2:179594496;179594495;179594494 |
N2B | None | None | chr2:None | chr2:None |
Novex-1 | None | None | chr2:None | chr2:None |
Novex-2 | None | None | chr2:None | chr2:None |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
T/I | rs367685188 | 0.172 | 0.497 | D | 0.679 | 0.345 | None | gnomAD-2.1.1 | 1.07E-05 | None | None | None | None | N | None | 1.24008E-04 | 0 | None | 0 | 0 | None | 0 | None | 0 | 0 | 0 |
T/I | rs367685188 | 0.172 | 0.497 | D | 0.679 | 0.345 | None | gnomAD-3.1.2 | 3.29E-05 | None | None | None | None | N | None | 1.20616E-04 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
T/I | rs367685188 | 0.172 | 0.497 | D | 0.679 | 0.345 | None | gnomAD-4.0.0 | 6.0897E-06 | None | None | None | None | N | None | 1.04822E-04 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
T/A | 0.0775 | likely_benign | 0.078 | benign | -1.195 | Destabilizing | 0.055 | N | 0.511 | neutral | D | 0.524442848 | None | None | N |
T/C | 0.3548 | ambiguous | 0.3555 | ambiguous | -0.885 | Destabilizing | 0.909 | D | 0.684 | prob.neutral | None | None | None | None | N |
T/D | 0.3817 | ambiguous | 0.3623 | ambiguous | -1.35 | Destabilizing | 0.396 | N | 0.645 | neutral | None | None | None | None | N |
T/E | 0.2534 | likely_benign | 0.2626 | benign | -1.171 | Destabilizing | 0.157 | N | 0.617 | neutral | None | None | None | None | N |
T/F | 0.1544 | likely_benign | 0.159 | benign | -0.903 | Destabilizing | 0.726 | D | 0.729 | prob.delet. | None | None | None | None | N |
T/G | 0.2527 | likely_benign | 0.2478 | benign | -1.6 | Destabilizing | 0.157 | N | 0.593 | neutral | None | None | None | None | N |
T/H | 0.172 | likely_benign | 0.1784 | benign | -1.721 | Destabilizing | 0.909 | D | 0.715 | prob.delet. | None | None | None | None | N |
T/I | 0.0985 | likely_benign | 0.1046 | benign | -0.14 | Destabilizing | 0.497 | N | 0.679 | prob.neutral | D | 0.523058768 | None | None | N |
T/K | 0.1362 | likely_benign | 0.1478 | benign | -0.578 | Destabilizing | 0.157 | N | 0.567 | neutral | None | None | None | None | N |
T/L | 0.0815 | likely_benign | 0.0848 | benign | -0.14 | Destabilizing | 0.272 | N | 0.596 | neutral | None | None | None | None | N |
T/M | 0.0872 | likely_benign | 0.0911 | benign | -0.099 | Destabilizing | 0.968 | D | 0.688 | prob.neutral | None | None | None | None | N |
T/N | 0.1192 | likely_benign | 0.1134 | benign | -1.192 | Destabilizing | 0.124 | N | 0.582 | neutral | D | 0.530619459 | None | None | N |
T/P | 0.5029 | ambiguous | 0.4704 | ambiguous | -0.46 | Destabilizing | 0.497 | N | 0.679 | prob.neutral | D | 0.524808718 | None | None | N |
T/Q | 0.1766 | likely_benign | 0.1863 | benign | -1.031 | Destabilizing | 0.567 | D | 0.687 | prob.neutral | None | None | None | None | N |
T/R | 0.0947 | likely_benign | 0.1064 | benign | -0.724 | Destabilizing | 0.003 | N | 0.373 | neutral | None | None | None | None | N |
T/S | 0.0949 | likely_benign | 0.0908 | benign | -1.442 | Destabilizing | 0.001 | N | 0.279 | neutral | N | 0.444421839 | None | None | N |
T/V | 0.0893 | likely_benign | 0.0949 | benign | -0.46 | Destabilizing | 0.272 | N | 0.591 | neutral | None | None | None | None | N |
T/W | 0.464 | ambiguous | 0.4624 | ambiguous | -1.0 | Destabilizing | 0.968 | D | 0.706 | prob.neutral | None | None | None | None | N |
T/Y | 0.1792 | likely_benign | 0.1775 | benign | -0.642 | Destabilizing | 0.726 | D | 0.73 | prob.delet. | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.