Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 6645 | 20158;20159;20160 | chr2:178727645;178727644;178727643 | chr2:179592372;179592371;179592370 |
N2AB | 6328 | 19207;19208;19209 | chr2:178727645;178727644;178727643 | chr2:179592372;179592371;179592370 |
N2A | 5401 | 16426;16427;16428 | chr2:178727645;178727644;178727643 | chr2:179592372;179592371;179592370 |
N2B | None | None | chr2:None | chr2:None |
Novex-1 | None | None | chr2:None | chr2:None |
Novex-2 | None | None | chr2:None | chr2:None |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
T/A | rs370671112 | -1.186 | 0.925 | N | 0.615 | 0.258 | None | gnomAD-2.1.1 | 2.54E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 3.4E-05 | None | 0 | 4.74E-05 | 0 |
T/A | rs370671112 | -1.186 | 0.925 | N | 0.615 | 0.258 | None | gnomAD-3.1.2 | 2.63E-05 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 5.88E-05 | 0 | 0 |
T/A | rs370671112 | -1.186 | 0.925 | N | 0.615 | 0.258 | None | gnomAD-4.0.0 | 2.36301E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 3.05744E-05 | 1.11349E-05 | 1.60658E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
T/A | 0.0993 | likely_benign | 0.106 | benign | -1.02 | Destabilizing | 0.925 | D | 0.615 | neutral | N | 0.473661919 | None | None | N |
T/C | 0.4808 | ambiguous | 0.483 | ambiguous | -0.693 | Destabilizing | 1.0 | D | 0.76 | deleterious | None | None | None | None | N |
T/D | 0.491 | ambiguous | 0.5416 | ambiguous | -1.822 | Destabilizing | 0.997 | D | 0.72 | prob.delet. | None | None | None | None | N |
T/E | 0.3762 | ambiguous | 0.4333 | ambiguous | -1.602 | Destabilizing | 1.0 | D | 0.719 | prob.delet. | None | None | None | None | N |
T/F | 0.2456 | likely_benign | 0.2611 | benign | -0.69 | Destabilizing | 1.0 | D | 0.811 | deleterious | None | None | None | None | N |
T/G | 0.3437 | ambiguous | 0.3902 | ambiguous | -1.428 | Destabilizing | 0.999 | D | 0.685 | prob.neutral | None | None | None | None | N |
T/H | 0.2219 | likely_benign | 0.2445 | benign | -1.608 | Destabilizing | 1.0 | D | 0.787 | deleterious | None | None | None | None | N |
T/I | 0.1296 | likely_benign | 0.1503 | benign | 0.059 | Stabilizing | 1.0 | D | 0.761 | deleterious | N | 0.463279892 | None | None | N |
T/K | 0.176 | likely_benign | 0.2022 | benign | -0.316 | Destabilizing | 1.0 | D | 0.719 | prob.delet. | None | None | None | None | N |
T/L | 0.1181 | likely_benign | 0.1346 | benign | 0.059 | Stabilizing | 1.0 | D | 0.671 | neutral | None | None | None | None | N |
T/M | 0.1022 | likely_benign | 0.1082 | benign | 0.008 | Stabilizing | 1.0 | D | 0.764 | deleterious | None | None | None | None | N |
T/N | 0.1621 | likely_benign | 0.1693 | benign | -1.147 | Destabilizing | 0.996 | D | 0.697 | prob.neutral | N | 0.504136438 | None | None | N |
T/P | 0.7227 | likely_pathogenic | 0.7838 | pathogenic | -0.271 | Destabilizing | 0.998 | D | 0.763 | deleterious | N | 0.515910817 | None | None | N |
T/Q | 0.2216 | likely_benign | 0.2497 | benign | -0.849 | Destabilizing | 0.999 | D | 0.771 | deleterious | None | None | None | None | N |
T/R | 0.1244 | likely_benign | 0.1461 | benign | -0.663 | Destabilizing | 1.0 | D | 0.761 | deleterious | None | None | None | None | N |
T/S | 0.1143 | likely_benign | 0.1167 | benign | -1.272 | Destabilizing | 0.477 | N | 0.345 | neutral | N | 0.462137156 | None | None | N |
T/V | 0.1255 | likely_benign | 0.1412 | benign | -0.271 | Destabilizing | 0.999 | D | 0.614 | neutral | None | None | None | None | N |
T/W | 0.608 | likely_pathogenic | 0.6581 | pathogenic | -0.989 | Destabilizing | 1.0 | D | 0.766 | deleterious | None | None | None | None | N |
T/Y | 0.2893 | likely_benign | 0.3114 | benign | -0.554 | Destabilizing | 1.0 | D | 0.811 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.