Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 6773 | 20542;20543;20544 | chr2:178726005;178726004;178726003 | chr2:179590732;179590731;179590730 |
N2AB | 6456 | 19591;19592;19593 | chr2:178726005;178726004;178726003 | chr2:179590732;179590731;179590730 |
N2A | 5529 | 16810;16811;16812 | chr2:178726005;178726004;178726003 | chr2:179590732;179590731;179590730 |
N2B | None | None | chr2:None | chr2:None |
Novex-1 | None | None | chr2:None | chr2:None |
Novex-2 | None | None | chr2:None | chr2:None |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/F | rs189557659 | -0.62 | 0.925 | N | 0.457 | 0.299 | None | gnomAD-3.1.2 | 1.97E-05 | None | None | None | None | I | None | 0 | 0 | 0 | 0 | 5.80271E-04 | None | 0 | 0 | 0 | 0 | 0 |
L/F | rs189557659 | -0.62 | 0.925 | N | 0.457 | 0.299 | None | 1000 genomes | 1.99681E-04 | None | None | None | None | I | None | 0 | 0 | None | None | 1E-03 | 0 | None | None | None | 0 | None |
L/F | rs189557659 | -0.62 | 0.925 | N | 0.457 | 0.299 | None | gnomAD-4.0.0 | 3.28221E-05 | None | None | None | None | I | None | 0 | 0 | None | 0 | 1.16449E-03 | None | 0 | 0 | 0 | 0 | 1.63372E-05 |
L/P | rs1327286420 | -0.657 | 0.99 | D | 0.641 | 0.557 | 0.789426192391 | gnomAD-4.0.0 | 1.64061E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 2.82917E-05 | None | 0 | 0 | 0 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
L/A | 0.1933 | likely_benign | 0.1719 | benign | -0.946 | Destabilizing | 0.743 | D | 0.495 | neutral | None | None | None | None | I |
L/C | 0.547 | ambiguous | 0.5186 | ambiguous | -0.689 | Destabilizing | 0.998 | D | 0.515 | neutral | None | None | None | None | I |
L/D | 0.5826 | likely_pathogenic | 0.5636 | ambiguous | -0.255 | Destabilizing | 0.992 | D | 0.64 | neutral | None | None | None | None | I |
L/E | 0.2743 | likely_benign | 0.2731 | benign | -0.31 | Destabilizing | 0.968 | D | 0.645 | neutral | None | None | None | None | I |
L/F | 0.1339 | likely_benign | 0.1131 | benign | -0.719 | Destabilizing | 0.925 | D | 0.457 | neutral | N | 0.492391507 | None | None | I |
L/G | 0.3945 | ambiguous | 0.3675 | ambiguous | -1.179 | Destabilizing | 0.976 | D | 0.639 | neutral | None | None | None | None | I |
L/H | 0.241 | likely_benign | 0.2165 | benign | -0.379 | Destabilizing | 0.993 | D | 0.673 | neutral | N | 0.507431116 | None | None | I |
L/I | 0.095 | likely_benign | 0.0829 | benign | -0.429 | Destabilizing | 0.002 | N | 0.218 | neutral | N | 0.516319223 | None | None | I |
L/K | 0.227 | likely_benign | 0.2224 | benign | -0.572 | Destabilizing | 0.547 | D | 0.615 | neutral | None | None | None | None | I |
L/M | 0.1131 | likely_benign | 0.1016 | benign | -0.424 | Destabilizing | 0.831 | D | 0.444 | neutral | None | None | None | None | I |
L/N | 0.2985 | likely_benign | 0.2642 | benign | -0.352 | Destabilizing | 0.992 | D | 0.642 | neutral | None | None | None | None | I |
L/P | 0.2704 | likely_benign | 0.2623 | benign | -0.567 | Destabilizing | 0.99 | D | 0.641 | neutral | D | 0.532019394 | None | None | I |
L/Q | 0.1181 | likely_benign | 0.1102 | benign | -0.547 | Destabilizing | 0.981 | D | 0.611 | neutral | None | None | None | None | I |
L/R | 0.1853 | likely_benign | 0.1886 | benign | -0.006 | Destabilizing | 0.974 | D | 0.614 | neutral | N | 0.484302805 | None | None | I |
L/S | 0.1819 | likely_benign | 0.1641 | benign | -0.897 | Destabilizing | 0.976 | D | 0.578 | neutral | None | None | None | None | I |
L/T | 0.1683 | likely_benign | 0.1514 | benign | -0.836 | Destabilizing | 0.634 | D | 0.497 | neutral | None | None | None | None | I |
L/V | 0.0883 | likely_benign | 0.0808 | benign | -0.567 | Destabilizing | None | N | 0.221 | neutral | N | 0.466757194 | None | None | I |
L/W | 0.2515 | likely_benign | 0.248 | benign | -0.739 | Destabilizing | 0.999 | D | 0.679 | prob.neutral | None | None | None | None | I |
L/Y | 0.3513 | ambiguous | 0.3197 | benign | -0.507 | Destabilizing | 0.854 | D | 0.474 | neutral | None | None | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.