Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 6914 | 20965;20966;20967 | chr2:178725464;178725463;178725462 | chr2:179590191;179590190;179590189 |
N2AB | 6597 | 20014;20015;20016 | chr2:178725464;178725463;178725462 | chr2:179590191;179590190;179590189 |
N2A | 5670 | 17233;17234;17235 | chr2:178725464;178725463;178725462 | chr2:179590191;179590190;179590189 |
N2B | None | None | chr2:None | chr2:None |
Novex-1 | None | None | chr2:None | chr2:None |
Novex-2 | None | None | chr2:None | chr2:None |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
F/L | rs397517495 | -1.394 | None | N | 0.317 | 0.129 | 0.311079019809 | gnomAD-2.1.1 | 4.03E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 8.9E-06 | 0 |
F/L | rs397517495 | -1.394 | None | N | 0.317 | 0.129 | 0.311079019809 | gnomAD-3.1.2 | 1.31E-05 | None | None | None | None | N | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 2.94E-05 | 0 | 0 |
F/L | rs397517495 | -1.394 | None | N | 0.317 | 0.129 | 0.311079019809 | gnomAD-4.0.0 | 1.36396E-05 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 1.8653E-05 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
F/A | 0.8248 | likely_pathogenic | 0.847 | pathogenic | -3.26 | Highly Destabilizing | 0.061 | N | 0.57 | neutral | None | None | None | None | N |
F/C | 0.5592 | ambiguous | 0.5754 | pathogenic | -2.433 | Highly Destabilizing | 0.921 | D | 0.769 | deleterious | N | 0.505064486 | None | None | N |
F/D | 0.9754 | likely_pathogenic | 0.9828 | pathogenic | -3.668 | Highly Destabilizing | 0.418 | N | 0.737 | prob.delet. | None | None | None | None | N |
F/E | 0.974 | likely_pathogenic | 0.9799 | pathogenic | -3.477 | Highly Destabilizing | 0.418 | N | 0.727 | prob.delet. | None | None | None | None | N |
F/G | 0.9486 | likely_pathogenic | 0.9582 | pathogenic | -3.71 | Highly Destabilizing | 0.228 | N | 0.72 | prob.delet. | None | None | None | None | N |
F/H | 0.917 | likely_pathogenic | 0.9283 | pathogenic | -2.136 | Highly Destabilizing | 0.94 | D | 0.713 | prob.delet. | None | None | None | None | N |
F/I | 0.1099 | likely_benign | 0.1152 | benign | -1.786 | Destabilizing | 0.001 | N | 0.294 | neutral | N | 0.388660904 | None | None | N |
F/K | 0.9781 | likely_pathogenic | 0.9846 | pathogenic | -2.496 | Highly Destabilizing | 0.418 | N | 0.724 | prob.delet. | None | None | None | None | N |
F/L | 0.6126 | likely_pathogenic | 0.5792 | pathogenic | -1.786 | Destabilizing | None | N | 0.317 | neutral | N | 0.452227672 | None | None | N |
F/M | 0.3872 | ambiguous | 0.394 | ambiguous | -1.578 | Destabilizing | 0.716 | D | 0.622 | neutral | None | None | None | None | N |
F/N | 0.9338 | likely_pathogenic | 0.9509 | pathogenic | -2.939 | Highly Destabilizing | 0.418 | N | 0.751 | deleterious | None | None | None | None | N |
F/P | 0.9903 | likely_pathogenic | 0.9922 | pathogenic | -2.29 | Highly Destabilizing | 0.593 | D | 0.771 | deleterious | None | None | None | None | N |
F/Q | 0.9602 | likely_pathogenic | 0.9674 | pathogenic | -2.947 | Highly Destabilizing | 0.836 | D | 0.791 | deleterious | None | None | None | None | N |
F/R | 0.9575 | likely_pathogenic | 0.9664 | pathogenic | -1.83 | Destabilizing | 0.593 | D | 0.779 | deleterious | None | None | None | None | N |
F/S | 0.8703 | likely_pathogenic | 0.8945 | pathogenic | -3.621 | Highly Destabilizing | 0.009 | N | 0.513 | neutral | N | 0.504810996 | None | None | N |
F/T | 0.8181 | likely_pathogenic | 0.8409 | pathogenic | -3.315 | Highly Destabilizing | 0.129 | N | 0.639 | neutral | None | None | None | None | N |
F/V | 0.1942 | likely_benign | 0.2068 | benign | -2.29 | Highly Destabilizing | 0.001 | N | 0.451 | neutral | N | 0.455171977 | None | None | N |
F/W | 0.6214 | likely_pathogenic | 0.6372 | pathogenic | -0.76 | Destabilizing | 0.983 | D | 0.583 | neutral | None | None | None | None | N |
F/Y | 0.3758 | ambiguous | 0.3874 | ambiguous | -1.193 | Destabilizing | 0.523 | D | 0.521 | neutral | N | 0.505064486 | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.