Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 7208 | 21847;21848;21849 | chr2:178723478;178723477;178723476 | chr2:179588205;179588204;179588203 |
N2AB | 6891 | 20896;20897;20898 | chr2:178723478;178723477;178723476 | chr2:179588205;179588204;179588203 |
N2A | 5964 | 18115;18116;18117 | chr2:178723478;178723477;178723476 | chr2:179588205;179588204;179588203 |
N2B | None | None | chr2:None | chr2:None |
Novex-1 | None | None | chr2:None | chr2:None |
Novex-2 | None | None | chr2:None | chr2:None |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
T/I | rs1250736680 | -0.273 | 0.961 | N | 0.647 | 0.357 | 0.467839254973 | gnomAD-2.1.1 | 4.03E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 5.6E-05 | None | 0 | None | 0 | 0 | 0 |
T/I | rs1250736680 | -0.273 | 0.961 | N | 0.647 | 0.357 | 0.467839254973 | gnomAD-4.0.0 | 2.05326E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 2.69886E-06 | 0 | 0 |
T/N | rs1250736680 | None | 0.994 | N | 0.615 | 0.37 | 0.44318313171 | gnomAD-4.0.0 | 2.73769E-06 | None | None | None | None | N | None | 0 | 6.71652E-05 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 1.6575E-05 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
T/A | 0.1101 | likely_benign | 0.1197 | benign | -1.125 | Destabilizing | 0.911 | D | 0.607 | neutral | N | 0.493741184 | None | None | N |
T/C | 0.563 | ambiguous | 0.5853 | pathogenic | -0.615 | Destabilizing | 1.0 | D | 0.699 | prob.neutral | None | None | None | None | N |
T/D | 0.6217 | likely_pathogenic | 0.6421 | pathogenic | -1.199 | Destabilizing | 0.996 | D | 0.677 | prob.neutral | None | None | None | None | N |
T/E | 0.4786 | ambiguous | 0.4896 | ambiguous | -1.003 | Destabilizing | 0.985 | D | 0.647 | neutral | None | None | None | None | N |
T/F | 0.3475 | ambiguous | 0.3749 | ambiguous | -0.859 | Destabilizing | 0.998 | D | 0.737 | prob.delet. | None | None | None | None | N |
T/G | 0.3944 | ambiguous | 0.4264 | ambiguous | -1.533 | Destabilizing | 0.985 | D | 0.651 | neutral | None | None | None | None | N |
T/H | 0.2923 | likely_benign | 0.3154 | benign | -1.641 | Destabilizing | 1.0 | D | 0.736 | prob.delet. | None | None | None | None | N |
T/I | 0.2429 | likely_benign | 0.2457 | benign | -0.054 | Destabilizing | 0.961 | D | 0.647 | neutral | N | 0.471838267 | None | None | N |
T/K | 0.2664 | likely_benign | 0.2815 | benign | -0.198 | Destabilizing | 0.971 | D | 0.637 | neutral | None | None | None | None | N |
T/L | 0.1601 | likely_benign | 0.1667 | benign | -0.054 | Destabilizing | 0.971 | D | 0.649 | neutral | None | None | None | None | N |
T/M | 0.1248 | likely_benign | 0.1316 | benign | -0.036 | Destabilizing | 0.999 | D | 0.712 | prob.delet. | None | None | None | None | N |
T/N | 0.2069 | likely_benign | 0.2214 | benign | -0.846 | Destabilizing | 0.994 | D | 0.615 | neutral | N | 0.489982202 | None | None | N |
T/P | 0.6933 | likely_pathogenic | 0.7416 | pathogenic | -0.381 | Destabilizing | 0.997 | D | 0.709 | prob.delet. | D | 0.524469192 | None | None | N |
T/Q | 0.287 | likely_benign | 0.3011 | benign | -0.651 | Destabilizing | 0.996 | D | 0.713 | prob.delet. | None | None | None | None | N |
T/R | 0.1691 | likely_benign | 0.1882 | benign | -0.456 | Destabilizing | 0.323 | N | 0.517 | neutral | None | None | None | None | N |
T/S | 0.1171 | likely_benign | 0.1312 | benign | -1.111 | Destabilizing | 0.659 | D | 0.529 | neutral | N | 0.469140486 | None | None | N |
T/V | 0.2046 | likely_benign | 0.2062 | benign | -0.381 | Destabilizing | 0.469 | N | 0.522 | neutral | None | None | None | None | N |
T/W | 0.7276 | likely_pathogenic | 0.7617 | pathogenic | -0.978 | Destabilizing | 1.0 | D | 0.737 | prob.delet. | None | None | None | None | N |
T/Y | 0.3768 | ambiguous | 0.4029 | ambiguous | -0.59 | Destabilizing | 0.999 | D | 0.744 | deleterious | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.