Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 7210 | 21853;21854;21855 | chr2:178723472;178723471;178723470 | chr2:179588199;179588198;179588197 |
N2AB | 6893 | 20902;20903;20904 | chr2:178723472;178723471;178723470 | chr2:179588199;179588198;179588197 |
N2A | 5966 | 18121;18122;18123 | chr2:178723472;178723471;178723470 | chr2:179588199;179588198;179588197 |
N2B | None | None | chr2:None | chr2:None |
Novex-1 | None | None | chr2:None | chr2:None |
Novex-2 | None | None | chr2:None | chr2:None |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
V/A | rs2078787546 | None | 0.081 | N | 0.488 | 0.236 | 0.571137827458 | gnomAD-3.1.2 | 6.57E-06 | None | None | None | None | N | None | 2.41E-05 | 0 | 0 | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
V/A | rs2078787546 | None | 0.081 | N | 0.488 | 0.236 | 0.571137827458 | gnomAD-4.0.0 | 6.57151E-06 | None | None | None | None | N | None | 2.4122E-05 | 0 | None | 0 | 0 | None | 0 | 0 | 0 | 0 | 0 |
V/M | rs2078788121 | None | 0.427 | D | 0.652 | 0.229 | 0.499154427049 | gnomAD-4.0.0 | 2.73776E-06 | None | None | None | None | N | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 3.59849E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
V/A | 0.1442 | likely_benign | 0.1532 | benign | -1.656 | Destabilizing | 0.081 | N | 0.488 | neutral | N | 0.489517898 | None | None | N |
V/C | 0.6821 | likely_pathogenic | 0.6892 | pathogenic | -1.236 | Destabilizing | 0.958 | D | 0.639 | neutral | None | None | None | None | N |
V/D | 0.3143 | likely_benign | 0.3173 | benign | -1.528 | Destabilizing | 0.124 | N | 0.671 | neutral | None | None | None | None | N |
V/E | 0.1754 | likely_benign | 0.1764 | benign | -1.397 | Destabilizing | 0.001 | N | 0.548 | neutral | N | 0.474203242 | None | None | N |
V/F | 0.121 | likely_benign | 0.1203 | benign | -1.041 | Destabilizing | 0.331 | N | 0.67 | neutral | None | None | None | None | N |
V/G | 0.2493 | likely_benign | 0.2717 | benign | -2.099 | Highly Destabilizing | 0.301 | N | 0.663 | neutral | N | 0.508636111 | None | None | N |
V/H | 0.3486 | ambiguous | 0.3474 | ambiguous | -1.714 | Destabilizing | 0.667 | D | 0.684 | prob.neutral | None | None | None | None | N |
V/I | 0.0702 | likely_benign | 0.0693 | benign | -0.475 | Destabilizing | 0.001 | N | 0.282 | neutral | None | None | None | None | N |
V/K | 0.1882 | likely_benign | 0.187 | benign | -1.105 | Destabilizing | 0.124 | N | 0.665 | neutral | None | None | None | None | N |
V/L | 0.1169 | likely_benign | 0.1168 | benign | -0.475 | Destabilizing | None | N | 0.273 | neutral | N | 0.476494185 | None | None | N |
V/M | 0.0853 | likely_benign | 0.0869 | benign | -0.56 | Destabilizing | 0.427 | N | 0.652 | neutral | D | 0.531963466 | None | None | N |
V/N | 0.2329 | likely_benign | 0.2366 | benign | -1.161 | Destabilizing | 0.667 | D | 0.7 | prob.neutral | None | None | None | None | N |
V/P | 0.9264 | likely_pathogenic | 0.9375 | pathogenic | -0.837 | Destabilizing | 0.859 | D | 0.671 | neutral | None | None | None | None | N |
V/Q | 0.1888 | likely_benign | 0.1869 | benign | -1.142 | Destabilizing | 0.011 | N | 0.54 | neutral | None | None | None | None | N |
V/R | 0.1467 | likely_benign | 0.1478 | benign | -0.886 | Destabilizing | 0.497 | N | 0.686 | prob.neutral | None | None | None | None | N |
V/S | 0.1873 | likely_benign | 0.1956 | benign | -1.839 | Destabilizing | 0.22 | N | 0.666 | neutral | None | None | None | None | N |
V/T | 0.1449 | likely_benign | 0.1466 | benign | -1.578 | Destabilizing | 0.22 | N | 0.601 | neutral | None | None | None | None | N |
V/W | 0.6082 | likely_pathogenic | 0.6027 | pathogenic | -1.382 | Destabilizing | 0.958 | D | 0.699 | prob.neutral | None | None | None | None | N |
V/Y | 0.4075 | ambiguous | 0.3984 | ambiguous | -1.007 | Destabilizing | 0.667 | D | 0.673 | neutral | None | None | None | None | N |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.