Isoform | Protein Position | Transcript Position | Chromosomal Position (HG38) | Chromosomal Position (HG19) |
---|---|---|---|---|
IC | 8028 | 24307;24308;24309 | chr2:178719308;178719307;178719306 | chr2:179584035;179584034;179584033 |
N2AB | 7711 | 23356;23357;23358 | chr2:178719308;178719307;178719306 | chr2:179584035;179584034;179584033 |
N2A | 6784 | 20575;20576;20577 | chr2:178719308;178719307;178719306 | chr2:179584035;179584034;179584033 |
N2B | None | None | chr2:None | chr2:None |
Novex-1 | None | None | chr2:None | chr2:None |
Novex-2 | None | None | chr2:None | chr2:None |
Novex-3 | None | None | chr2:None | chr2:None |
SNV | RS | DUET |
PolyPhen-2 |
Condel |
Rhapsody |
REVEL |
MVP |
Source |
MAF |
Disease |
Zygosity |
Site annotation |
mCSM PPI |
Predicted PPI site |
Comments |
AFR |
AMR |
AMS |
ASJ |
EAS |
EUR |
FIN |
MDE |
NFE |
SAS |
OTH |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G/A | rs560897705 | -0.12 | 0.41 | N | 0.369 | 0.286 | 0.194818534648 | gnomAD-2.1.1 | 3.19E-05 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | None | 0 | 6.49E-05 | 0 |
G/A | rs560897705 | -0.12 | 0.41 | N | 0.369 | 0.286 | 0.194818534648 | gnomAD-3.1.2 | 1.97E-05 | None | None | None | None | I | None | 0 | 0 | 0 | 0 | 0 | None | 0 | 0 | 4.41E-05 | 0 | 0 |
G/A | rs560897705 | -0.12 | 0.41 | N | 0.369 | 0.286 | 0.194818534648 | gnomAD-4.0.0 | 6.19751E-06 | None | None | None | None | I | None | 0 | 0 | None | 0 | 0 | None | 0 | 0 | 8.47644E-06 | 0 | 0 |
SAV |
AlphaMissense (IC) |
AlphaMissense Class (IC) |
AlphaMissense (N2AB) |
AlphaMissense Class (N2AB) |
mCSM |
mCSM class |
PolyPhen-2 |
PolyPhen-2 Class |
Rhapsody |
Rhapsody Class |
Condel |
Condel Score |
Site annotation |
mCSM PPI |
Predicted PPI site |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G/A | 0.1232 | likely_benign | 0.1247 | benign | -0.272 | Destabilizing | 0.41 | N | 0.369 | neutral | N | 0.461189524 | None | None | I |
G/C | 0.1727 | likely_benign | 0.1751 | benign | -0.857 | Destabilizing | 0.98 | D | 0.779 | deleterious | None | None | None | None | I |
G/D | 0.1428 | likely_benign | 0.1498 | benign | -0.644 | Destabilizing | 0.764 | D | 0.611 | neutral | None | None | None | None | I |
G/E | 0.1774 | likely_benign | 0.1953 | benign | -0.819 | Destabilizing | 0.709 | D | 0.633 | neutral | N | 0.51127511 | None | None | I |
G/F | 0.3389 | likely_benign | 0.3633 | ambiguous | -1.082 | Destabilizing | 0.98 | D | 0.769 | deleterious | None | None | None | None | I |
G/H | 0.208 | likely_benign | 0.2303 | benign | -0.491 | Destabilizing | 0.98 | D | 0.716 | prob.delet. | None | None | None | None | I |
G/I | 0.1916 | likely_benign | 0.2079 | benign | -0.496 | Destabilizing | 0.866 | D | 0.774 | deleterious | None | None | None | None | I |
G/K | 0.2657 | likely_benign | 0.3053 | benign | -0.745 | Destabilizing | 0.764 | D | 0.607 | neutral | None | None | None | None | I |
G/L | 0.2267 | likely_benign | 0.2427 | benign | -0.496 | Destabilizing | 0.866 | D | 0.72 | prob.delet. | None | None | None | None | I |
G/M | 0.3145 | likely_benign | 0.347 | ambiguous | -0.463 | Destabilizing | 0.993 | D | 0.772 | deleterious | None | None | None | None | I |
G/N | 0.169 | likely_benign | 0.1801 | benign | -0.404 | Destabilizing | 0.764 | D | 0.591 | neutral | None | None | None | None | I |
G/P | 0.6923 | likely_pathogenic | 0.7435 | pathogenic | -0.392 | Destabilizing | 0.866 | D | 0.708 | prob.delet. | None | None | None | None | I |
G/Q | 0.2375 | likely_benign | 0.2632 | benign | -0.715 | Destabilizing | 0.866 | D | 0.71 | prob.delet. | None | None | None | None | I |
G/R | 0.1942 | likely_benign | 0.2163 | benign | -0.285 | Destabilizing | 0.023 | N | 0.354 | neutral | N | 0.461696503 | None | None | I |
G/S | 0.0739 | likely_benign | 0.0693 | benign | -0.516 | Destabilizing | 0.006 | N | 0.3 | neutral | None | None | None | None | I |
G/T | 0.1151 | likely_benign | 0.1154 | benign | -0.629 | Destabilizing | 0.764 | D | 0.619 | neutral | None | None | None | None | I |
G/V | 0.149 | likely_benign | 0.1564 | benign | -0.392 | Destabilizing | 0.83 | D | 0.731 | prob.delet. | N | 0.476117455 | None | None | I |
G/W | 0.3013 | likely_benign | 0.3347 | benign | -1.206 | Destabilizing | 0.991 | D | 0.743 | deleterious | N | 0.496943961 | None | None | I |
G/Y | 0.2605 | likely_benign | 0.2884 | benign | -0.872 | Destabilizing | 0.98 | D | 0.773 | deleterious | None | None | None | None | I |
Titin has multiple isoforms, the longest being the theoretical IC (inferred complete) isoform which contains all 363 in-frame titin exons. Here all isoform positions have been mapped onto the IC sequence, with an exception being the C-terminal of the much shorter novex-3 isoform. This contains the out of frame exon 48 which cannot be mapped to the other isoforms.